Cozy and simple applesauce chocolate chip muffins are delightfully moist and full of warm spice, subtle apple flavor, and pockets of melty chocolate. They make an excellent snack, breakfast treat, or after-dinner bite.

After perfecting classic applesauce muffins, I had to try a chocolate chip version. Baking with applesauce keeps these muffins tender while adding a gentle apple note that pairs beautifully with chocolate and warming spices.

Step by step instructions
These muffins are straightforward to make and require basic equipment: a 12-cup muffin tin, muffin liners, mixing bowls, a spatula, and a whisk.
Step 1 — Prep. Preheat the oven to 425°F (218°C). Line a 12-cup muffin tin with liners and set aside.
Step 2 — Mix dry ingredients. In a medium bowl whisk together the flour, baking soda, baking powder, cinnamon, cloves, allspice, cornstarch, and salt. Set aside.
Step 3 — Whisk sugars and oil. In a large bowl whisk the dark brown sugar, white sugar, and oil until combined.
Step 4 — Add wet ingredients. Stir in the applesauce, eggs, and vanilla, whisking until smooth.


Step 5 — Combine. Gently fold the dry ingredients into the wet with a spatula until just combined and a soft batter forms. Avoid over-mixing to keep the muffins tender.


Step 6 — Add chocolate chips. Fold in mini chocolate chips just until evenly distributed. Let the batter rest for 10 minutes — this hydrates the flour and helps the leavening agents produce a lighter, taller muffin.


Step 7 — Scoop and bake. Divide the batter evenly among the 12 liners, filling each to the top. Sprinkle a few extra mini chocolate chips and a pinch of white sugar on top if desired for extra shine and crunch.


Bake at 425°F for 5 minutes, then reduce the oven temperature to 350°F (176°C) and bake for an additional 13–15 minutes, or until a toothpick inserted in the center comes out clean. Remove from the oven and allow to cool briefly before serving.

FAQ
How do I store these muffins?
Store cooled muffins in an airtight container at room temperature for up to 3 days. For longer storage, refrigerate up to one week.
Can I freeze these muffins?
Yes. Once fully cooled, wrap each muffin in plastic wrap or parchment and place in a sealed freezer bag. Freeze for up to 2 months. Thaw at room temperature, reheat in a 300°F oven for 10 minutes, or microwave in short intervals until warm.
Can I use sweetened applesauce?
Yes — using sweetened applesauce will make the muffins slightly sweeter, so you may want to reduce added sugar if you prefer a less sweet result.
Can I replace the eggs with more applesauce?
Yes. For each egg, substitute 1/4 cup (60 g) applesauce. For this recipe, replace two eggs with an additional 1/2 cup (120 g) applesauce for an egg-free version.
Why rest the batter?
Resting the batter for 10 minutes hydrates the flour and activates the leavening, producing a lighter crumb and taller rise.

PS: If you enjoyed this recipe, consider leaving a star review. I love seeing photos and feedback — it helps others find great recipes.
Applesauce Chocolate Chip Muffins
Moist and flavorful muffins with warm spices, apple notes, and gooey chocolate pockets. Perfect for breakfast, snacks, or dessert.
Ingredients
- 1 cup unsweetened applesauce
- 1/2 cup oil
- 2 large eggs, room temperature
- 1 tbsp vanilla
- 2/3 cup dark brown sugar
- 1/3 cup white sugar
- 2 cups all-purpose flour
- 1 tsp baking soda
- 1 1/2 tsps baking powder
- 1 1/2 tsp cinnamon
- Pinch of cloves
- Pinch of allspice
- 2 tsp cornstarch
- 1/4 tsp salt
- 1/2 cup mini chocolate chips (or regular semisweet chips)
Instructions
- Preheat the oven to 425°F (218°C). Line a 12-cup muffin tin with liners.
- Whisk the flour, baking soda, baking powder, cornstarch, cinnamon, cloves, allspice, and salt in a bowl; set aside.
- In a large bowl, whisk together the brown sugar, white sugar, and oil.
- Add the applesauce, eggs, and vanilla to the sugar mixture and whisk until smooth.
- Fold the dry ingredients into the wet mixture with a spatula until just combined; do not over-mix.
- Gently fold in the mini chocolate chips, then let the batter rest for 10 minutes.
- Divide the batter among the liners, filling to the top. Sprinkle extra chocolate chips and a little white sugar on top if desired.
- Bake at 425°F for 5 minutes, then reduce the oven to 350°F (176°C) and bake 13–15 more minutes or until a toothpick comes out clean. Cool and enjoy.
Notes
Mini chocolate chips: I prefer mini chips for smaller pockets of melty chocolate, but regular semisweet chips work well too.
Eggless option: Replace the two eggs with an extra 1/2 cup (120 g) applesauce.
Nutrition (per muffin)
Calories: 278 kcal; Carbohydrates: 42 g; Protein: 3 g; Fat: 11 g; Sugar: 24 g; Sodium: 155 mg.